Convert bi-directional edges into uni-directional ones instead of 'canonicalOrientation' in GraphLoader.edgeListFile.
This function is useful when a graph is loaded as it is and then is transformed into one with canonical edges.
It rewrites the vertex ids of edges so that srcIds are bigger than dstIds, and merges the duplicated edges.

Author: Takeshi Yamamuro <linguin.m.s@gmail.com>

Closes #3760 from maropu/ConvertToCanonicalEdgesSpike and squashes the following commits:

7f8b580 [Takeshi Yamamuro] Add a function to convert into a graph with canonical edges in GraphOps

Author: Sandy Ryza <sandy@cloudera.com>

Closes #3896 from sryza/sandy-spark-5087 and squashes the following commits:

65611d0 [Sandy Ryza] Review feedback
3294176 [Sandy Ryza] SPARK-5087. [YARN] Merge yarn.Client and yarn.ClientBase

This commit exists to close the following pull requests on Github:

Closes #3880 (close requested by 'ash211')
Closes #3649 (close requested by 'marmbrus')
Closes #3791 (close requested by 'mengxr')
Closes #3559 (close requested by 'andrewor14')
Closes #3879 (close requested by 'ash211')

Add extractor for SparseVector and DenseVector in MLlib to save some code while performing pattern matching on Vectors. For example, previously we may use:

     vec match {
          case dv: DenseVector =>
            val values = dv.values
            ...
          case sv: SparseVector =>
            val indices = sv.indices
            val values = sv.values
            val size = sv.size
            ...
      }

with extractor it is:

    vec match {
        case DenseVector(values) =>
          ...
        case SparseVector(size, indices, values) =>
          ...
    }

Author: Shuo Xiang <shuoxiangpub@gmail.com>

Closes #3919 from coderxiang/extractor and squashes the following commits:

359e8d5 [Shuo Xiang] merge master
ca5fc3e [Shuo Xiang] merge master
0b1e190 [Shuo Xiang] use extractor for vectors in RowMatrix.scala
e961805 [Shuo Xiang] use extractor for vectors in StandardScaler.scala
c2bbdaf [Shuo Xiang] use extractor for vectors in IDFscala
8433922 [Shuo Xiang] use extractor for vectors in NaiveBayes.scala and Normalizer.scala
d83c7ca [Shuo Xiang] use extractor for vectors in Vectors.scala
5523dad [Shuo Xiang] Add extractor for SparseVector and DenseVector

[SPARK-5126][Core] Verify Spark urls before creating Actors so that invalid urls can crash the process.

Because `actorSelection` will return `deadLetters` for an invalid path,  Worker keeps quiet for an invalid master url. It's better to log an error so that people can find such problem quickly.

This PR will check the url before sending to `actorSelection`, throw and log a SparkException for an invalid url.

Author: zsxwing <zsxwing@gmail.com>

Closes #3927 from zsxwing/SPARK-5126 and squashes the following commits:

9d429ee [zsxwing] Create a utility method in Utils to parse Spark url; verify urls before creating Actors so that invalid urls can crash the process.
8286e51 [zsxwing] Check the url before sending to Akka and log the error if the url is invalid

SPARK-5132:
stageInfoToJson: Stage Attempt Id
stageInfoFromJson: Attempt Id

Author: hushan[胡珊] <hushan@xiaomi.com>

Closes #3932 from suyanNone/json-stage and squashes the following commits:

41419ab [hushan[胡珊]] Correct stage Attempt Id key in stageInfofromJson

When `x` is positive and large, computing `math.log(1 + math.exp(x))` will lead to arithmetic
overflow. This will happen when `x > 709.78` which is not a very large number.
It can be addressed by rewriting the formula into `x + math.log1p(math.exp(-x))` when `x > 0`.

Author: DB Tsai <dbtsai@alpinenow.com>

Closes #3915 from dbtsai/mathutil and squashes the following commits:

bec6a84 [DB Tsai] remove empty line
3239541 [DB Tsai] revert part of patch into another PR
23144f3 [DB Tsai] doc
49f3658 [DB Tsai] temp
6c29ed3 [DB Tsai] formating
f8447f9 [DB Tsai] address another overflow issue in gradientMultiplier in LOR gradient code
64eefd0 [DB Tsai] first commit

Enabled HistoryServer to show incomplete applications.
We can see the log for incomplete applications by clicking the bottom link.

Author: Masayoshi TSUZUKI <tsudukim@oss.nttdata.co.jp>

Closes #3467 from tsudukim/feature/SPARK-2458-2 and squashes the following commits:

76205d2 [Masayoshi TSUZUKI] Fixed and added test code.
29a04a9 [Masayoshi TSUZUKI] Merge branch 'master' of github.com:tsudukim/spark into feature/SPARK-2458-2
f9ef854 [Masayoshi TSUZUKI] Added space between "if" and "(". Fixed "Incomplete" as capitalized in the web UI. Modified double negative variable name.
9b465b0 [Masayoshi TSUZUKI] Modified typo and better implementation.
3ed8a41 [Masayoshi TSUZUKI] Modified too long lines.
08ea14d [Masayoshi TSUZUKI] [SPARK-2458] Make failed application log visible on History Server

...xt

https://issues.apache.org/jira/browse/SPARK-2165

I still have 2 questions:
* If this config is not set, we should use yarn's corresponding value or a default value(like 2) on spark side?
* Is the config name best? Or "spark.yarn.am.maxAttempts"?

Author: WangTaoTheTonic <barneystinson@aliyun.com>

Closes #3878 from WangTaoTheTonic/SPARK-2165 and squashes the following commits:

1416c83 [WangTaoTheTonic] use the name spark.yarn.maxAppAttempts
202ac85 [WangTaoTheTonic] rephrase some
afdfc99 [WangTaoTheTonic] more detailed description
91562c6 [WangTaoTheTonic] add support for setting maxAppAttempts in the ApplicationSubmissionContext

Nowadays, yarn-client will exit directly when the HA change happens no matter how many times the am should retry.
The reason may be that the default final status only considerred the sys.exit, and the yarn-client HA cann't benefit from this.
So we should distinct the default final status between client and cluster, because the SUCCEEDED status may cause the HA failed in client mode and UNDEFINED may cause the error reporter in cluster when using sys.exit.

Author: huangzhaowei <carlmartinmax@gmail.com>

Closes #3771 from SaintBacchus/YarnHA and squashes the following commits:

c02bfcc [huangzhaowei] Improve the comment of the funciton 'getDefaultFinalStatus'
0e69924 [huangzhaowei] Bug fix: fix the yarn-client code to support HA

This is a minor pr where I think that we can simply take minus of `margin`, instead of subtracting  `margin`.

Mathematically, they are equal. But the modified equation is the common form of logistic loss function and so more readable. It also computes more accurate value as some quick tests show.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #3899 from viirya/logit_func and squashes the following commits:

91a3860 [Liang-Chi Hsieh] Modified for comment.
0aa51e4 [Liang-Chi Hsieh] Further simplified.
72a295e [Liang-Chi Hsieh] Revert LogLoss back and add more considerations in Logistic Loss.
a3f83ca [Liang-Chi Hsieh] Fix a bug.
2bc5712 [Liang-Chi Hsieh] Simplify loss function.

Related to #3643. Follow the previous suggestion to add unit test for `sqdist` in `VectorsSuite`.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #3869 from viirya/sqdist_test and squashes the following commits:

fb743da [Liang-Chi Hsieh] Modified for comment and fix bug.
90a08f3 [Liang-Chi Hsieh] Modified for comment.
39a3ca6 [Liang-Chi Hsieh] Take care of special case.
b789f42 [Liang-Chi Hsieh] More proper unit test with random sparsity pattern.
c36be68 [Liang-Chi Hsieh] Add unit test for sqdist.

MultivariateGaussian was calling both pinv() and det() on the covariance matrix, effectively performing two matrix decompositions.  Both values are now computed using the singular value decompositon. Both the pseudo-inverse and the pseudo-determinant are used to guard against singular matrices.

Author: Travis Galoppo <tjg2107@columbia.edu>

Closes #3871 from tgaloppo/spark-5017 and squashes the following commits:

383b5b3 [Travis Galoppo] MultivariateGaussian - minor optimization in density calculation
a5b8bc5 [Travis Galoppo] Added additional points to tests in test suite. Fixed comment in MultivariateGaussian
629d9d0 [Travis Galoppo] Moved some test values from var to val.
dc3d0f7 [Travis Galoppo] Catch potential exception calculating pseudo-determinant. Style improvements.
d448137 [Travis Galoppo] Added test suite for MultivariateGaussian, including test for degenerate case.
1989be0 [Travis Galoppo] SPARK-5017 - Fixed to use SVD to compute determinant and inverse of covariance matrix.  Previous code called both pinv() and det(), effectively performing two matrix decompositions. Additionally, the pinv() implementation in Breeze is known to fail for singular matrices.
b4415ea [Travis Galoppo] Merge branch 'spark-5017' of https://github.com/tgaloppo/spark into spark-5017
6f11b6d [Travis Galoppo] SPARK-5017 - Use SVD to compute determinant and inverse of covariance matrix. Code was calling both det() and pinv(), effectively performing two matrix decompositions. Futhermore, Breeze pinv() currently fails for singular matrices.
fd9784c [Travis Galoppo] SPARK-5017 - Use SVD to compute determinant and inverse of covariance matrix

This PR:

- Reenables `surefire`, and copies config from `scalatest` (which is itself an old fork of `surefire`, so similar)
- Tells `surefire` to test only Java tests
- Enables `surefire` and `scalatest` for all children, and in turn eliminates some duplication.

For me this causes the Scala and Java tests to be run once each, it seems, as desired. It doesn't affect the SBT build but works for Maven. I still need to verify that all of the Scala tests and Java tests are being run.

Author: Sean Owen <sowen@cloudera.com>

Closes #3651 from srowen/SPARK-4159 and squashes the following commits:

2e8a0af [Sean Owen] Remove specialized SPARK_HOME setting for REPL, YARN tests as it appears to be obsolete
12e4558 [Sean Owen] Append to unit-test.log instead of overwriting, so that both surefire and scalatest output is preserved. Also standardize/correct comments a bit.
e6f8601 [Sean Owen] Reenable Java tests by reenabling surefire with config cloned from scalatest; centralize test config in the parent

The sum of vertices on matrix (v0 to v11) is 12. And, I think one same block overlaps in this strategy.

This is minor PR, so I didn't file in JIRA.

Author: kj-ki <kikushima.kenji@lab.ntt.co.jp>

Closes #3904 from kj-ki/fix-partitionstrategy-comments and squashes the following commits:

79829d9 [kj-ki] Fix comments for 2D partitioning.

This patch refactors Spark Streaming's FileInputStream tests to remove uses of Thread.sleep() and SystemClock, which should hopefully resolve some longstanding flakiness in these tests (see SPARK-1600).

Key changes:

- Modify FileInputDStream to use the scheduler's Clock instead of System.currentTimeMillis(); this allows it to be tested using ManualClock.
- Fix a synchronization issue in ManualClock's `currentTime` method.
- Add a StreamingTestWaiter class which allows callers to block until a certain number of batches have finished.
- Change the FileInputStream tests so that files' modification times are manually set based off of ManualClock; this eliminates many Thread.sleep calls.
- Update these tests to use the withStreamingContext fixture.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #3801 from JoshRosen/SPARK-1600 and squashes the following commits:

e4494f4 [Josh Rosen] Address a potential race when setting file modification times
8340bd0 [Josh Rosen] Use set comparisons for output.
0b9c252 [Josh Rosen] Fix some ManualClock usage problems.
1cc689f [Josh Rosen] ConcurrentHashMap -> SynchronizedMap
db26c3a [Josh Rosen] Use standard timeout in ScalaTest `eventually` blocks.
3939432 [Josh Rosen] Rename StreamingTestWaiter to BatchCounter
0b9c3a1 [Josh Rosen] Wait for checkpoint to complete
863d71a [Josh Rosen] Remove Thread.sleep that was used to make task run slowly
b4442c3 [Josh Rosen] batchTimeToSelectedFiles should be thread-safe
15b48ee [Josh Rosen] Replace several TestWaiter methods w/ ScalaTest eventually.
fffc51c [Josh Rosen] Revert "Remove last remaining sleep() call"
dbb8247 [Josh Rosen] Remove last remaining sleep() call
566a63f [Josh Rosen] Fix log message and comment typos
da32f3f [Josh Rosen] Fix log message and comment typos
3689214 [Josh Rosen] Merge remote-tracking branch 'origin/master' into SPARK-1600
c8f06b1 [Josh Rosen] Remove Thread.sleep calls in FileInputStream CheckpointSuite test.
d4f2d87 [Josh Rosen] Refactor file input stream tests to not rely on SystemClock.
dda1403 [Josh Rosen] Add StreamingTestWaiter class.
3c3efc3 [Josh Rosen] Synchronize `currentTime` in ManualClock
a95ddc4 [Josh Rosen] Modify FileInputDStream to use Clock class.

ExecutorRunnableUtil is a parent of ExecutorRunnable because of the yarn-alpha and yarn-stable split. Now that yarn-alpha is gone, this commit squashes the unnecessary hierarchy. The methods from ExecutorRunnableUtil are added as private.

Author: Kostas Sakellis <kostas@cloudera.com>

Closes #3696 from ksakellis/kostas-spark-4843 and squashes the following commits:

486716f [Kostas Sakellis] Moved prepareEnvironment call to after yarnConf declaration
470e22e [Kostas Sakellis] Fixed indentation and renamed sparkConf variable
9b1b1c9 [Kostas Sakellis] SPARK-4843 [YARN] Squash ExecutorRunnableUtil and ExecutorRunnable

[SPARK-5040][SQL] Support expressing unresolved attributes using $"attribute name" notation in SQL DSL.

Author: Reynold Xin <rxin@databricks.com>

Closes #3862 from rxin/stringcontext-attr and squashes the following commits:

9b10f57 [Reynold Xin] Rename StrongToAttributeConversionHelper
72121af [Reynold Xin] [SPARK-5040][SQL] Support expressing unresolved attributes using $"attribute name" notation in SQL DSL.

Author: Reynold Xin <rxin@databricks.com>

Closes #3903 from rxin/timeout-120 and squashes the following commits:

7c2138e [Reynold Xin] [SPARK-5093] Set spark.network.timeout to 120s consistently.

This is a small change addressing a potentially significant bug in how PySpark + MLlib handles non-float64 numpy arrays. The automatic conversion to `DenseVector` that occurs when passing RDDs to MLlib algorithms in PySpark should automatically upcast to float64s, but currently this wasn't actually happening. As a result, non-float64 would be silently parsed inappropriately during SerDe, yielding erroneous results when running, for example, KMeans.

The PR includes the fix, as well as a new test for the correct conversion behavior.

davies

Author: freeman <the.freeman.lab@gmail.com>

Closes #3902 from freeman-lab/fix-vector-convert and squashes the following commits:

764db47 [freeman] Add a test for proper conversion behavior
704f97e [freeman] Return array after changing type

...nt at all.

- fixed a scope of runAsSparkUser from MesosExecutorDriver.run to MesosExecutorBackend.launchTask
- See the Jira Issue for more details.

Author: Jongyoul Lee <jongyoul@gmail.com>

Closes #3741 from jongyoul/SPARK-4465 and squashes the following commits:

46ad71e [Jongyoul Lee] [SPARK-4465] runAsSparkUser doesn't affect TaskRunner in Mesos environment at all. - Removed unused import
3d6631f [Jongyoul Lee] [SPARK-4465] runAsSparkUser doesn't affect TaskRunner in Mesos environment at all. - Removed comments and adjusted indentations
2343f13 [Jongyoul Lee] [SPARK-4465] runAsSparkUser doesn't affect TaskRunner in Mesos environment at all. - fixed a scope of runAsSparkUser from MesosExecutorDriver.run to MesosExecutorBackend.launchTask

https://issues.apache.org/jira/browse/SPARK-5057

Author: WangTao <barneystinson@aliyun.com>
Author: WangTaoTheTonic <barneystinson@aliyun.com>

Closes #3875 from WangTaoTheTonic/SPARK-5057 and squashes the following commits:

1503487 [WangTao] use string interpolation
706c8a7 [WangTaoTheTonic] log more messages

[SPARK-4688] Have a single shared network timeout in Spark

Author: Varun Saxena <vsaxena.varun@gmail.com>
Author: varunsaxena <vsaxena.varun@gmail.com>

Closes #3562 from varunsaxena/SPARK-4688 and squashes the following commits:

6e97f72 [Varun Saxena] [SPARK-4688] Single shared network timeout
cd783a2 [Varun Saxena] SPARK-4688
d6f8c29 [Varun Saxena] SCALA-4688
9562b15 [Varun Saxena] SPARK-4688
a75f014 [varunsaxena] SPARK-4688
594226c [varunsaxena] SPARK-4688

Add `assert(sc.listenerBus.waitUntilEmpty(WAIT_TIMEOUT_MILLIS))` to make sure `sparkListener` receive the message.

Author: zsxwing <zsxwing@gmail.com>

Closes #3889 from zsxwing/SPARK-5074 and squashes the following commits:

e61c198 [zsxwing] Fix a non-deterministic test failure

Because `sparkEnv.blockManager.master.removeBlock` is asynchronous, we need to make sure the block has already been removed before calling `super.enqueueSuccessfulTask`.

Author: zsxwing <zsxwing@gmail.com>

Closes #3894 from zsxwing/SPARK-5083 and squashes the following commits:

d97c03d [zsxwing] Fix a flaky test in TaskResultGetterSuite

It's not necessary to set `TaskSchedulerImpl.dagScheduler` in preStart. It's safe to set it after `initializeEventProcessActor()`.

Author: zsxwing <zsxwing@gmail.com>

Closes #3887 from zsxwing/SPARK-5069 and squashes the following commits:

d95894f [zsxwing] Fix the race condition of TaskSchedulerImpl.dagScheduler

A simple fix would be adding `assert(e1.appId == e2.appId)` for `SparkListenerApplicationStart`. But actually we can use `===` for well-defined case class directly. Therefore, instead of fixing this issue, I use `===` to compare those well-defined case classes (all fields have implemented a correct `equals` method, such as primitive types)

Author: zsxwing <zsxwing@gmail.com>

Closes #3886 from zsxwing/SPARK-5067 and squashes the following commits:

0a51711 [zsxwing] Use '===' to compare well-defined case class

This patch disables output spec. validation for jobs launched through Spark Streaming, since this interferes with checkpoint recovery.

Hadoop OutputFormats have a `checkOutputSpecs` method which performs certain checks prior to writing output, such as checking whether the output directory already exists.  SPARK-1100 added checks for FileOutputFormat, SPARK-1677 (#947) added a SparkConf configuration to disable these checks, and SPARK-2309 (#1088) extended these checks to run for all OutputFormats, not just FileOutputFormat.

In Spark Streaming, we might have to re-process a batch during checkpoint recovery, so `save` actions may be called multiple times.  In addition to `DStream`'s own save actions, users might use `transform` or `foreachRDD` and call the `RDD` and `PairRDD` save actions.  When output spec. validation is enabled, the second calls to these actions will fail due to existing output.

This patch automatically disables output spec. validation for jobs submitted by the Spark Streaming scheduler.  This is done by using Scala's `DynamicVariable` to propagate the bypass setting without having to mutate SparkConf or introduce a global variable.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #3832 from JoshRosen/SPARK-4835 and squashes the following commits:

36eaf35 [Josh Rosen] Add comment explaining use of transform() in test.
6485cf8 [Josh Rosen] Add test case in Streaming; fix bug for transform()
7b3e06a [Josh Rosen] Remove Streaming-specific setting to undo this change; update conf. guide
bf9094d [Josh Rosen] Revise disableOutputSpecValidation() comment to not refer to Spark Streaming.
e581d17 [Josh Rosen] Deduplicate isOutputSpecValidationEnabled logic.
762e473 [Josh Rosen] [SPARK-4835] Disable validateOutputSpecs for Spark Streaming jobs.

Please review the unit test for MQTT

Author: bilna <bilnap@am.amrita.edu>
Author: Bilna P <bilna.p@gmail.com>

Closes #3844 from Bilna/master and squashes the following commits:

acea3a3 [bilna] Adding dependency with scope test
28681fa [bilna] Merge remote-tracking branch 'upstream/master'
fac3904 [bilna] Correction in Indentation and coding style
ed9db4c [bilna] Merge remote-tracking branch 'upstream/master'
4b34ee7 [Bilna P] Update MQTTStreamSuite.scala
04503cf [bilna] Added embedded broker service for mqtt test
89d804e [bilna] Merge remote-tracking branch 'upstream/master'
fc8eb28 [bilna] Merge remote-tracking branch 'upstream/master'
4b58094 [Bilna P] Update MQTTStreamSuite.scala
b1ac4ad [bilna] Added BeforeAndAfter
5f6bfd2 [bilna] Added BeforeAndAfter
e8b6623 [Bilna P] Update MQTTStreamSuite.scala
5ca6691 [Bilna P] Update MQTTStreamSuite.scala
8616495 [bilna] [SPARK-4631] unit test for MQTT

Author: Dale <tigerquoll@outlook.com>

Closes #3809 from tigerquoll/SPARK-4787 and squashes the following commits:

5661e01 [Dale] [SPARK-4787] Ensure that call to stop() doesn't lose the exception by using a finally block.
2172578 [Dale] [SPARK-4787] Stop context properly if an exception occurs during DAGScheduler initialization.

Removed `sleep()` from the `stop()` method of the `TaskSchedulerImpl` class which, from the JIRA ticket, is believed to be a legacy artifact slowing down testing originally introduced in the `ClusterScheduler` class.

Author: Brennon York <brennon.york@capitalone.com>

Closes #3851 from brennonyork/SPARK-794 and squashes the following commits:

04c3e64 [Brennon York] Removed sleep() from the stop() method

Updated the broken link pointing to the KafkaWordCount example to the correct one.

Author: sigmoidanalytics <mayur@sigmoidanalytics.com>

Closes #3877 from sigmoidanalytics/patch-1 and squashes the following commits:

3e19b31 [sigmoidanalytics] Updated broken links

Changed projrect to project :)

Author: Akhil Das <akhld@darktech.ca>

Closes #3876 from akhld/patch-1 and squashes the following commits:

e0cf9ef [Akhil Das] Fixed typos in streaming-kafka-integration.md

This PR is a fixed version of the original PR #3237 by watermen and scwf.
This adds the ability to specify how many elements to print in `DStream.print`.

Author: Yadong Qi <qiyadong2010@gmail.com>
Author: q00251598 <qiyadong@huawei.com>
Author: Tathagata Das <tathagata.das1565@gmail.com>
Author: wangfei <wangfei1@huawei.com>

Closes #3865 from tdas/print-num and squashes the following commits:

cd34e9e [Tathagata Das] Fix bug
7c09f16 [Tathagata Das] Merge remote-tracking branch 'apache-github/master' into HEAD
bb35d1a [Yadong Qi] Update MimaExcludes.scala
f8098ca [Yadong Qi] Update MimaExcludes.scala
f6ac3cb [Yadong Qi] Update MimaExcludes.scala
e4ed897 [Yadong Qi] Update MimaExcludes.scala
3b9d5cf [wangfei] fix conflicts
ec8a3af [q00251598] move to  Spark 1.3
26a70c0 [q00251598] extend the Python DStream's print
b589a4b [q00251598] add another print function

The job launched by DriverSuite should bind the web UI to an ephemeral port, since it looks like port contention in this test has caused a large number of Jenkins failures when many builds are started simultaneously.  Our tests already disable the web UI, but this doesn't affect subprocesses launched by our tests.  In this case, I've opted to bind to an ephemeral port instead of disabling the UI because disabling features in this test may mask its ability to catch certain bugs.

See also: e24d3a9a

Author: Josh Rosen <joshrosen@databricks.com>

Closes #3873 from JoshRosen/driversuite-webui-port and squashes the following commits:

48cd05c [Josh Rosen] [HOTFIX] Bind web UI to ephemeral port in DriverSuite.

As we learned in #3580, not explicitly typing implicit functions can lead to compiler bugs and potentially unexpected runtime behavior.

This is a follow up PR for rest of Spark (outside Spark SQL). The original PR for Spark SQL can be found at https://github.com/apache/spark/pull/3859

Author: Reynold Xin <rxin@databricks.com>

Closes #3860 from rxin/implicit and squashes the following commits:

73702f9 [Reynold Xin] [SPARK-5038] Add explicit return type for implicit functions.

Re-enable MiMa for Streaming Flume Sink module, now that 1.1.0 is released, per the JIRA TO-DO. That's pretty much all there is to this.

Author: Sean Owen <sowen@cloudera.com>

Closes #3842 from srowen/SPARK-2757 and squashes the following commits:

50ff80e [Sean Owen] Exclude apparent false positive turned up by re-enabling MiMa checks for Streaming Flume Sink
0e5ba5c [Sean Owen] Re-enable MiMa for Streaming Flume Sink module

Spark Streaming's ReceiverMessage trait should extend Serializable in order to fix a subtle bug that only occurs when running on a real cluster:

If you attempt to send a fire-and-forget message to a remote Akka actor and that message cannot be serialized, then this seems to lead to more-or-less silent failures. As an optimization, Akka skips message serialization for messages sent within the same JVM. As a result, Spark's unit tests will never fail due to non-serializable Akka messages, but these will cause mostly-silent failures when running on a real cluster.

Before this patch, here was the code for ReceiverMessage:

```
/** Messages sent to the NetworkReceiver. */
private[streaming] sealed trait ReceiverMessage
private[streaming] object StopReceiver extends ReceiverMessage
```

Since ReceiverMessage does not extend Serializable and StopReceiver is a regular `object`, not a `case object`, StopReceiver will throw serialization errors. As a result, graceful receiver shutdown is broken on real clusters (and local-cluster mode) but works in local modes. If you want to reproduce this, try running the word count example from the Streaming Programming Guide in the Spark shell:

```
import org.apache.spark._
import org.apache.spark.streaming._
import org.apache.spark.streaming.StreamingContext._
val ssc = new StreamingContext(sc, Seconds(10))
// Create a DStream that will connect to hostname:port, like localhost:9999
val lines = ssc.socketTextStream("localhost", 9999)
// Split each line into words
val words = lines.flatMap(_.split(" "))
import org.apache.spark.streaming.StreamingContext._
// Count each word in each batch
val pairs = words.map(word => (word, 1))
val wordCounts = pairs.reduceByKey(_ + _)
// Print the first ten elements of each RDD generated in this DStream to the console
wordCounts.print()
ssc.start()
Thread.sleep(10000)
ssc.stop(true, true)
```

Prior to this patch, this would work correctly in local mode but fail when running against a real cluster (it would report that some receivers were not shut down).

Author: Josh Rosen <joshrosen@databricks.com>

Closes #3857 from JoshRosen/SPARK-5035 and squashes the following commits:

71d0eae [Josh Rosen] [SPARK-5035] ReceiverMessage trait should extend Serializable.

Removed unnecessary parameters to predictMembership()

CC: jkbradley

Author: Travis Galoppo <tjg2107@columbia.edu>

Closes #3854 from tgaloppo/spark-5020 and squashes the following commits:

1bf4669 [Travis Galoppo] renamed predictMembership() to predictSoft()
0f1d96e [Travis Galoppo] SPARK-5020 - Removed superfluous parameters from predictMembership()

This is a follow-up work of [SPARK-4537](https://issues.apache.org/jira/browse/SPARK-4537). Adding total received records and processed records metrics back to UI.

![screenshot](https://dl.dropboxusercontent.com/u/19230832/screenshot.png)

Author: jerryshao <saisai.shao@intel.com>

Closes #3852 from jerryshao/SPARK-5028 and squashes the following commits:

c8c4877 [jerryshao] Add total received and processed metrics to Streaming UI