- May 13, 2015
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Hari Shreedharan authored
[SPARK-7356] [STREAMING] Fix flakey tests in FlumePollingStreamSuite using SparkSink's batch CountDownLatch. This is meant to make the FlumePollingStreamSuite deterministic. Now we basically count the number of batches that have been completed - and then verify the results rather than sleeping for random periods of time. Author: Hari Shreedharan <hshreedharan@apache.org> Closes #5918 from harishreedharan/flume-test-fix and squashes the following commits: 93f24f3 [Hari Shreedharan] Add an eventually block to ensure that all received data is processed. Refactor the dstream creation and remove redundant code. 1108804 [Hari Shreedharan] [SPARK-7356][STREAMING] Fix flakey tests in FlumePollingStreamSuite using SparkSink's batch CountDownLatch.
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Andrew Or authored
zsxwing Author: Andrew Or <andrew@databricks.com> Closes #6134 from andrewor14/private-streaming-uiutils and squashes the following commits: 225df94 [Andrew Or] Privatize class
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Andrew Or authored
Old stages are removed without much feedback to the user. This happens very often in streaming. See screenshots below for more detail. zsxwing **Before** <img src="https://cloud.githubusercontent.com/assets/2133137/7621031/643cc1e0-f978-11e4-8f42-09decaac44a7.png" width="500px"/> ------------------------- **After** <img src="https://cloud.githubusercontent.com/assets/2133137/7621037/6e37348c-f978-11e4-84a5-e44e154f9b13.png" width="400px"/> Author: Andrew Or <andrew@databricks.com> Closes #6132 from andrewor14/dag-viz-remove-gracefully and squashes the following commits: 43175cd [Andrew Or] Handle removed jobs and stages gracefully
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Andrew Or authored
This is pretty useful for MLlib. <img src="https://cloud.githubusercontent.com/assets/2133137/7599650/c7d03dd8-f8b8-11e4-8c0a-0a89e786c90f.png" width="400px"/> Author: Andrew Or <andrew@databricks.com> Closes #6100 from andrewor14/dag-viz-hover and squashes the following commits: fefe2af [Andrew Or] Link tooltips for nodes that belong to the same RDD 90c6a7e [Andrew Or] Assign classes to clusters and nodes, not IDs
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Andrew Or authored
Subsequent fix following #5966. I tried this out locally. Author: Andrew Or <andrew@databricks.com> Closes #6129 from andrewor14/211-compilation and squashes the following commits: 713868f [Andrew Or] Fix compilation issue for scala 2.11
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Andrew Or authored
This is necessary for streaming and long-running Spark applications. zsxwing tdas Author: Andrew Or <andrew@databricks.com> Closes #6125 from andrewor14/viz-listener-leak and squashes the following commits: 8660949 [Andrew Or] Fix thing + add tests 33c0843 [Andrew Or] Clean up old job state
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Reynold Xin authored
JavaTypeInference into catalyst types.DateUtils into catalyst CacheManager into execution DefaultParserDialect into catalyst Author: Reynold Xin <rxin@databricks.com> Closes #6108 from rxin/sql-rename and squashes the following commits: 3fc9613 [Reynold Xin] Fixed import ordering. 83d9ff4 [Reynold Xin] Fixed codegen tests. e271e86 [Reynold Xin] mima f4e24a6 [Reynold Xin] [SQL] Move some classes into packages that are more appropriate.
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scwf authored
Optimize the case of `project(_, sort)` , a example is: `select key from (select * from testData order by key) t` before this PR: ``` == Parsed Logical Plan == 'Project ['key] 'Subquery t 'Sort ['key ASC], true 'Project [*] 'UnresolvedRelation [testData], None == Analyzed Logical Plan == Project [key#0] Subquery t Sort [key#0 ASC], true Project [key#0,value#1] Subquery testData LogicalRDD [key#0,value#1], MapPartitionsRDD[1] == Optimized Logical Plan == Project [key#0] Sort [key#0 ASC], true LogicalRDD [key#0,value#1], MapPartitionsRDD[1] == Physical Plan == Project [key#0] Sort [key#0 ASC], true Exchange (RangePartitioning [key#0 ASC], 5), [] PhysicalRDD [key#0,value#1], MapPartitionsRDD[1] ``` after this PR ``` == Parsed Logical Plan == 'Project ['key] 'Subquery t 'Sort ['key ASC], true 'Project [*] 'UnresolvedRelation [testData], None == Analyzed Logical Plan == Project [key#0] Subquery t Sort [key#0 ASC], true Project [key#0,value#1] Subquery testData LogicalRDD [key#0,value#1], MapPartitionsRDD[1] == Optimized Logical Plan == Sort [key#0 ASC], true Project [key#0] LogicalRDD [key#0,value#1], MapPartitionsRDD[1] == Physical Plan == Sort [key#0 ASC], true Exchange (RangePartitioning [key#0 ASC], 5), [] Project [key#0] PhysicalRDD [key#0,value#1], MapPartitionsRDD[1] ``` with this rule we will first do column pruning on the table and then do sorting. Author: scwf <wangfei1@huawei.com> This patch had conflicts when merged, resolved by Committer: Michael Armbrust <michael@databricks.com> Closes #5838 from scwf/pruning and squashes the following commits: b00d833 [scwf] address michael's comment e230155 [scwf] fix tests failure b09b895 [scwf] improve column pruning -
Burak Yavuz authored
The missing pieces in ml.classification for Python! cc mengxr Author: Burak Yavuz <brkyvz@gmail.com> Closes #6106 from brkyvz/ml-class and squashes the following commits: dd78237 [Burak Yavuz] fix style 1048e29 [Burak Yavuz] ready for PR
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leahmcguire authored
[SPARK-7545] [MLLIB] Added check in Bernoulli Naive Bayes to make sure that both training and predict features have values of 0 or 1 Author: leahmcguire <lmcguire@salesforce.com> Closes #6073 from leahmcguire/binaryCheckNB and squashes the following commits: b8442c2 [leahmcguire] changed to if else for value checks 911bf83 [leahmcguire] undid reformat 4eedf1e [leahmcguire] moved bernoulli check 9ee9e84 [leahmcguire] fixed style error 3f3b32c [leahmcguire] fixed zero one check so only called in combiner 831fd27 [leahmcguire] got test working f44bb3c [leahmcguire] removed changes from CV branch 67253f0 [leahmcguire] added check to bernoulli to ensure feature values are zero or one f191c71 [leahmcguire] fixed name 58d060b [leahmcguire] changed param name and test according to comments 04f0d3c [leahmcguire] Added stats from cross validation as a val in the cross validation model to save them for user access
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Burak Yavuz authored
Added `ml.feature.Bucketizer` to PySpark. cc mengxr Author: Burak Yavuz <brkyvz@gmail.com> Closes #6124 from brkyvz/ml-bucket and squashes the following commits: 05285be [Burak Yavuz] added sphinx doc 6abb6ed [Burak Yavuz] added support for Bucketizer
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Tim Ellison authored
The IBM JVM reports an failed library load with a slightly different error message to Oracle's JVM. Update the test case to allow for either form. Author: Tim Ellison <tellison@users.noreply.github.com> Author: Tim Ellison <t.p.ellison@gmail.com> Closes #6119 from tellison/LibraryLoading and squashes the following commits: 2c5cd4e [Tim Ellison] Reduce assertion to check for the mesos library name f48c194 [Tim Ellison] Split long line b1079d7 [Tim Ellison] [MINOR] [CORE] Accept alternative mesos unsatisfied link error in test.
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Tim Ellison authored
…arch. - zSeries 64-bit Java reports its architecture as s390x, so enhance the 64-bit check to accommodate that value. - SizeEstimator can detect whether IBM Java is using compressed object pointers using info in the "java.vm.info" property, so will do a better job than failing on the HotSpot MBean and guessing. Author: Tim Ellison <t.p.ellison@gmail.com> Closes #6085 from tellison/SizeEstimator and squashes the following commits: 1b6ff6a [Tim Ellison] Merge branch 'master' of https://github.com/apache/spark into SizeEstimator 0968989 [Tim Ellison] [MINOR] Enhance SizeEstimator to detect IBM compressed refs and s390 arch.
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Tim Ellison authored
IBM's Java VM doesn't have the concept of a permgen, so this option shouldn't be passed when the vendor property shows it is an IBM JDK. Author: Tim Ellison <t.p.ellison@gmail.com> Author: Tim Ellison <tellison@users.noreply.github.com> Closes #6055 from tellison/MaxPermSize and squashes the following commits: 3a0fb66 [Tim Ellison] Convert tabs back to spaces 6ad4266 [Tim Ellison] Remove unnecessary else clauses to reduce nesting. d27174b [Tim Ellison] Merge branch 'master' of https://github.com/apache/spark into MaxPermSize 42a8c3f [Tim Ellison] [MINOR] Avoid passing the PermGenSize option to IBM JVMs.
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Wenchen Fan authored
Author: Wenchen Fan <cloud0fan@outlook.com> Closes #6074 from cloud-fan/7551 and squashes the following commits: e6f579e [Wenchen Fan] allow space 2b86699 [Wenchen Fan] handle blank e218d99 [Wenchen Fan] address comments 54c4209 [Wenchen Fan] fix 7551
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Cheng Lian authored
This PR migrates Parquet data source to the newly introduced `FSBasedRelation`. `FSBasedParquetRelation` is created to replace `ParquetRelation2`. Major differences are: 1. Partition discovery code has been factored out to `FSBasedRelation` 1. `AppendingParquetOutputFormat` is not used now. Instead, an anonymous subclass of `ParquetOutputFormat` is used to handle appending and writing dynamic partitions 1. When scanning partitioned tables, `FSBasedParquetRelation.buildScan` only builds an `RDD[Row]` for a single selected partition 1. `FSBasedParquetRelation` doesn't rely on Catalyst expressions for filter push down, thus it doesn't extend `CatalystScan` anymore After migrating `JSONRelation` (which extends `CatalystScan`), we can remove `CatalystScan`. <!-- Reviewable:start --> [<img src="https://reviewable.io/review_button.png" height=40 alt="Review on Reviewable"/>](https://reviewable.io/reviews/apache/spark/6090) <!-- Reviewable:end --> Author: Cheng Lian <lian@databricks.com> Closes #6090 from liancheng/parquet-migration and squashes the following commits: 6063f87 [Cheng Lian] Casts to OutputCommitter rather than FileOutputCommtter bfd1cf0 [Cheng Lian] Fixes compilation error introduced while rebasing f9ea56e [Cheng Lian] Adds ParquetRelation2 related classes to MiMa check whitelist 261d8c1 [Cheng Lian] Minor bug fix and more tests db65660 [Cheng Lian] Migrates Parquet data source to FSBasedRelation
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zsxwing authored
[SPARK-7589] [STREAMING] [WEBUI] Make "Input Rate" in the Streaming page consistent with other pages This PR makes "Input Rate" in the Streaming page consistent with Job and Stage pages.   Author: zsxwing <zsxwing@gmail.com> Closes #6102 from zsxwing/SPARK-7589 and squashes the following commits: 2745225 [zsxwing] Make "Input Rate" in the Streaming page consistent with other pages
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Cheng Hao authored
Some third-party UDTF extensions generate additional rows in the "GenericUDTF.close()" method, which is supported / documented by Hive. https://cwiki.apache.org/confluence/display/Hive/DeveloperGuide+UDTF However, Spark SQL ignores the "GenericUDTF.close()", and it causes bug while porting job from Hive to Spark SQL. Author: Cheng Hao <hao.cheng@intel.com> Closes #5383 from chenghao-intel/udtf_close and squashes the following commits: 98b4e4b [Cheng Hao] Support UDTF.close
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Cheng Lian authored
Author: Cheng Lian <lian@databricks.com> Closes #6123 from liancheng/remove-println and squashes the following commits: 03356b6 [Cheng Lian] Removes debugging println
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Yin Huai authored
We need to add a log entry before calling `abortTask`/`abortJob`. Otherwise, an exception from `abortTask`/`abortJob` will shadow the real cause. cc liancheng Author: Yin Huai <yhuai@databricks.com> Closes #6105 from yhuai/logCause and squashes the following commits: 8dfe0d8 [Yin Huai] Log cause.
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Cheng Lian authored
[SPARK-7599] [SQL] Don't restrict customized output committers to be subclasses of FileOutputCommitter Author: Cheng Lian <lian@databricks.com> Closes #6118 from liancheng/spark-7599 and squashes the following commits: 31e1bd6 [Cheng Lian] Don't restrict customized output committers to be subclasses of FileOutputCommitter
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Masayoshi TSUZUKI authored
escape spaces in the arguments. Author: Masayoshi TSUZUKI <tsudukim@oss.nttdata.co.jp> Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp> Closes #5447 from tsudukim/feature/SPARK-6568-2 and squashes the following commits: 3f9a188 [Masayoshi TSUZUKI] modified some errors. ed46047 [Masayoshi TSUZUKI] avoid scalastyle errors. 1784239 [Masayoshi TSUZUKI] removed Utils.formatPath. e03f289 [Masayoshi TSUZUKI] removed testWindows from Utils.resolveURI and Utils.resolveURIs. replaced SystemUtils.IS_OS_WINDOWS to Utils.isWindows. removed Utils.formatPath from PythonRunner.scala. 84c33d0 [Masayoshi TSUZUKI] - use resolveURI in nonLocalPaths - run tests for Windows path only on Windows 016128d [Masayoshi TSUZUKI] fixed to use File.toURI() 2c62e3b [Masayoshi TSUZUKI] Merge pull request #1 from sarutak/SPARK-6568-2 7019a8a [Masayoshi TSUZUKI] Merge branch 'master' of https://github.com/apache/spark into feature/SPARK-6568-2 45946ee [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-6568-2 10f1c73 [Kousuke Saruta] Added a comment 93c3c40 [Kousuke Saruta] Merge branch 'classpath-handling-fix' of github.com:sarutak/spark into SPARK-6568-2 649da82 [Kousuke Saruta] Fix classpath handling c7ba6a7 [Masayoshi TSUZUKI] [SPARK-6568] spark-shell.cmd --jars option does not accept the jar that has space in its path
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linweizhong authored
These R process only used to communicate with JVM process on local, so binding to localhost is more reasonable then wildcard ip. Author: linweizhong <linweizhong@huawei.com> Closes #6053 from Sephiroth-Lin/spark-7526 and squashes the following commits: 5303af7 [linweizhong] bind to localhost rather than wildcard ip
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Sun Rui authored
[SPARK-7482] [SPARKR] Rename some DataFrame API methods in SparkR to match their counterparts in Scala. Author: Sun Rui <rui.sun@intel.com> Closes #6007 from sun-rui/SPARK-7482 and squashes the following commits: 5c5cf5e [Sun Rui] Implement alias loadDF() as a new function. 3a30c10 [Sun Rui] Rename load()/save() to read.df()/write.df(). Also add loadDF()/saveDF() as aliases. 9f569d6 [Sun Rui] [SPARK-7482][SparkR] Rename some DataFrame API methods in SparkR to match their counterparts in Scala.
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Santiago M. Mola authored
This makes HiveContext.analyzer overrideable. Author: Santiago M. Mola <santi@mola.io> Closes #6086 from smola/patch-3 and squashes the following commits: 8ece136 [Santiago M. Mola] [SPARK-7566][SQL] Add type to HiveContext.analyzer
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- May 12, 2015
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Reynold Xin authored
This builds on https://github.com/apache/spark/pull/5932 and should close https://github.com/apache/spark/pull/5932 as well. As an example: ```python df.select(when(df['age'] == 2, 3).otherwise(4).alias("age")).collect() ``` Author: Reynold Xin <rxin@databricks.com> Author: kaka1992 <kaka_1992@163.com> Closes #6072 from rxin/when-expr and squashes the following commits: 8f49201 [Reynold Xin] Throw exception if otherwise is applied twice. 0455eda [Reynold Xin] Reset run-tests. bfb9d9f [Reynold Xin] Updated documentation and test cases. 762f6a5 [Reynold Xin] Merge pull request #5932 from kaka1992/IFCASE 95724c6 [kaka1992] Update 8218d0a [kaka1992] Update 801009e [kaka1992] Update 76d6346 [kaka1992] [SPARK-7321][SQL] Add Column expression for conditional statements (if, case)
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Reynold Xin authored
This pull request adds since tag to all public methods/classes in SQL/DataFrame to indicate which version the methods/classes were first added. Author: Reynold Xin <rxin@databricks.com> Closes #6101 from rxin/tbc and squashes the following commits: ed55e11 [Reynold Xin] Add since version to all DataFrame methods.
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Patrick Wendell authored
The issue is that the behavior of the ASF JIRA silently changed. Now when the "Resolve Issue" transition occurs, the default resolution is "Pending Closed". We used to count on the default behavior being to set the resolution as "Fixed". The solution is to explicitly set the resolution as "Fixed" and not count on default behavior. Author: Patrick Wendell <patrick@databricks.com> Closes #6103 from pwendell/merge-script-fix and squashes the following commits: dcc16a6 [Patrick Wendell] Always set resolution to "Fixed" in PR merge script.
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zsxwing authored
#5526 uses `Job.getInstance`, which does not exist in the old Hadoop versions. Just use `new Job` to replace it. cc liancheng Author: zsxwing <zsxwing@gmail.com> Closes #6095 from zsxwing/hotfix and squashes the following commits: b0c2049 [zsxwing] Use the old Job API to support old Hadoop versions
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Xiangrui Meng authored
Remove `Param` and `Params` from `pyspark.ml` and add a section in the doc. brkyvz Author: Xiangrui Meng <meng@databricks.com> Closes #6094 from mengxr/SPARK-7572 and squashes the following commits: 022abd6 [Xiangrui Meng] do not import Param/Params under spark.ml
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Tathagata Das authored
[SPARK-7554] [STREAMING] Throw exception when an active/stopped StreamingContext is used to create DStreams and output operations Author: Tathagata Das <tathagata.das1565@gmail.com> Closes #6099 from tdas/SPARK-7554 and squashes the following commits: 2cd4158 [Tathagata Das] Throw exceptions on attempts to add stuff to active and stopped contexts.
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Xiangrui Meng authored
`RankingMetrics` contains a ClassTag, which is hard to create in Java. This PR adds a factory method `of` for Java users. coderxiang Author: Xiangrui Meng <meng@databricks.com> Closes #6098 from mengxr/SPARK-7528 and squashes the following commits: e5d57ae [Xiangrui Meng] make RankingMetrics Java-friendly
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Tathagata Das authored
In a REPL/notebook environment, its very easy to lose a reference to a StreamingContext by overriding the variable name. So if you happen to execute the following commands ``` val ssc = new StreamingContext(...) // cmd 1 ssc.start() // cmd 2 ... val ssc = new StreamingContext(...) // accidentally run cmd 1 again ``` The value of ssc will be overwritten. Now you can neither start the new context (as only one context can be started), nor stop the previous context (as the reference is lost). Hence its best to maintain a singleton reference to the active context, so that we never loose reference for the active context. Since this problem occurs useful in REPL environments, its best to add this as an Experimental support in the Scala API only so that it can be used in Scala REPLs and notebooks. Author: Tathagata Das <tathagata.das1565@gmail.com> Closes #6070 from tdas/SPARK-7553 and squashes the following commits: 731c9a1 [Tathagata Das] Fixed style a797171 [Tathagata Das] Added more unit tests 19fc70b [Tathagata Das] Added :: Experimental :: in docs 64706c9 [Tathagata Das] Fixed test 634db5d [Tathagata Das] Merge remote-tracking branch 'apache-github/master' into SPARK-7553 3884a25 [Tathagata Das] Fixing test bug d37a846 [Tathagata Das] Added getActive and getActiveOrCreate
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Joseph K. Bradley authored
Minor cleanups discussed with [~mengxr]: * move OneVsRest from reduction to classification sub-package * make model constructor private Some doc cleanups too CC: harsha2010 Could you please verify this looks OK? Thanks! Author: Joseph K. Bradley <joseph@databricks.com> Closes #6097 from jkbradley/onevsrest-cleanup and squashes the following commits: 4ecd48d [Joseph K. Bradley] org imports 430b065 [Joseph K. Bradley] moved OneVsRest from reduction subpackage to classification. small java doc style fixes 9f8b9b9 [Joseph K. Bradley] Small cleanups to OneVsRest. Made model constructor private to ml package.
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Joseph K. Bradley authored
Added feature transformer subsection to spark.ml guide, with HashingTF and Tokenizer. Added JavaHashingTFSuite to test Java examples in new guide. I've run Scala, Python examples in the Spark/PySpark shells. I ran the Java examples via the test suite (with small modifications for printing). CC: mengxr Author: Joseph K. Bradley <joseph@databricks.com> Closes #6093 from jkbradley/hashingtf-guide and squashes the following commits: d5d213f [Joseph K. Bradley] small fix dd6e91a [Joseph K. Bradley] fixes from code review of user guide 33c3ff9 [Joseph K. Bradley] small fix bc6058c [Joseph K. Bradley] fix link 361a174 [Joseph K. Bradley] Added subsection for feature transformers to spark.ml guide, with HashingTF and Tokenizer. Added JavaHashingTFSuite to test Java examples in new guide
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Yuhao Yang authored
jira: https://issues.apache.org/jira/browse/SPARK-7496 Update LDA subsection of clustering section of MLlib programming guide to include OnlineLDA. Author: Yuhao Yang <hhbyyh@gmail.com> Closes #6046 from hhbyyh/ldaDocument and squashes the following commits: 4b6fbfa [Yuhao Yang] add online paper and some comparison fd4c983 [Yuhao Yang] update lda document for optimizers
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zsxwing authored
[SPARK-7406] [STREAMING] [WEBUI] Add tooltips for "Scheduling Delay", "Processing Time" and "Total Delay" Screenshots:   tdas as we discussed offline Author: zsxwing <zsxwing@gmail.com> Closes #5952 from zsxwing/SPARK-7406 and squashes the following commits: 2b004ea [zsxwing] Merge branch 'master' into SPARK-7406 e9eb506 [zsxwing] Update tooltip contents 2215b2a [zsxwing] Add tooltips for "Scheduling Delay", "Processing Time" and "Total Delay"
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Xiangrui Meng authored
`scala.Math` is deprecated since 2.8. This PR only touchs `Math` usages in MLlib. dbtsai Author: Xiangrui Meng <meng@databricks.com> Closes #6092 from mengxr/SPARK-7571 and squashes the following commits: fe8f8d3 [Xiangrui Meng] Math -> math
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Venkata Ramana Gollamudi authored
Few jdbc drivers like SybaseIQ support passing username and password only through connection properties. So the same needs to be supported for SQLContext.jdbc, dataframe.createJDBCTable and dataframe.insertIntoJDBC. Added as default arguments or overrided function to support backward compatability. Author: Venkata Ramana Gollamudi <ramana.gollamudi@huawei.com> Closes #6009 from gvramana/add_jdbc_conn_properties and squashes the following commits: 396a0d0 [Venkata Ramana Gollamudi] fixed comments d66dd8c [Venkata Ramana Gollamudi] fixed comments 1b8cd8c [Venkata Ramana Gollamudi] Support jdbc connection properties
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Xiangrui Meng authored
We make special treatment for +inf in `Bucketizer`. This could be simplified by always including the largest split value in the last bucket. E.g., (x1, x2, x3) defines buckets [x1, x2) and [x2, x3]. This shouldn't affect user code much, and there are applications that need to include the right-most value. For example, we can bucketize ratings from 0 to 10 to bad, neutral, and good with splits 0, 4, 6, 10. It may reads weird if the users need to put 0, 4, 6, 10.1 (or 11). This also update the impl to use `Arrays.binarySearch` and `withClue` in test. yinxusen jkbradley Author: Xiangrui Meng <meng@databricks.com> Closes #6075 from mengxr/SPARK-7559 and squashes the following commits: e28f910 [Xiangrui Meng] update bucketizer impl
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