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    be496e89
    Notebook: add pyHealth dataset parsing (incomplete) · be496e89
    aBotel authored
    Add a custom wrapper around the MIMIC3Dataset pyHealth class that
    add functions to process the D_* text tables to extract the natural
    language we need for DescEmb.
    
    Processing functions are not complete. TODO actually write these.
    
    Force MIMIC3Dataset to load from local files using global `DATA_DIR_`
    
    Added skeleton for 2 pyHealth tasks readmission_pred_task, diagnosis_pred_task.
    These are from the tutorial and they will be necessary to take the output of
    MIMIC3DatasetWrapper and turn it into a test/train dataset.
    TODO - incorporate the text data into the output of these tasks
    
    TODO - hook up BERT model to some fake pasted strings of what we expect the
    dataset to look like to verify it runs as we expect.
    be496e89
    Notebook: add pyHealth dataset parsing (incomplete)
    aBotel authored
    Add a custom wrapper around the MIMIC3Dataset pyHealth class that
    add functions to process the D_* text tables to extract the natural
    language we need for DescEmb.
    
    Processing functions are not complete. TODO actually write these.
    
    Force MIMIC3Dataset to load from local files using global `DATA_DIR_`
    
    Added skeleton for 2 pyHealth tasks readmission_pred_task, diagnosis_pred_task.
    These are from the tutorial and they will be necessary to take the output of
    MIMIC3DatasetWrapper and turn it into a test/train dataset.
    TODO - incorporate the text data into the output of these tasks
    
    TODO - hook up BERT model to some fake pasted strings of what we expect the
    dataset to look like to verify it runs as we expect.
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