-
aBotel authored
Add a custom wrapper around the MIMIC3Dataset pyHealth class that add functions to process the D_* text tables to extract the natural language we need for DescEmb. Processing functions are not complete. TODO actually write these. Force MIMIC3Dataset to load from local files using global `DATA_DIR_` Added skeleton for 2 pyHealth tasks readmission_pred_task, diagnosis_pred_task. These are from the tutorial and they will be necessary to take the output of MIMIC3DatasetWrapper and turn it into a test/train dataset. TODO - incorporate the text data into the output of these tasks TODO - hook up BERT model to some fake pasted strings of what we expect the dataset to look like to verify it runs as we expect.
aBotel authoredAdd a custom wrapper around the MIMIC3Dataset pyHealth class that add functions to process the D_* text tables to extract the natural language we need for DescEmb. Processing functions are not complete. TODO actually write these. Force MIMIC3Dataset to load from local files using global `DATA_DIR_` Added skeleton for 2 pyHealth tasks readmission_pred_task, diagnosis_pred_task. These are from the tutorial and they will be necessary to take the output of MIMIC3DatasetWrapper and turn it into a test/train dataset. TODO - incorporate the text data into the output of these tasks TODO - hook up BERT model to some fake pasted strings of what we expect the dataset to look like to verify it runs as we expect.
Loading