"We recommend using VMD for visualizing the simulations trajectories with:\n",
"We recommend using [VMD](https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD) for visualizing the simulations trajectories with:\n",
and [ARBD](http://bionano.physics.illinois.edu/arbd).
<!-- ## Instructions -->
<!-- Follow the pdf for steps 1-2, which cover the usage of a command line utility that makes fast multi-resolution simulations of DNA objects very easy to perform. -->
<!-- Then launch the Jupyter notebook "step3.ipynb" for an introduction to scripting with the `mrdna` framework. -->
<!-- If you have any questions or concerns, please contact Chris Maffeo at [cmaffeo2@illinois.edu](mailto:cmaffeo2@illinois.edu). -->
If you have any questions or concerns, please contact Chris Maffeo at [cmaffeo2@illinois.edu](mailto:cmaffeo2@illinois.edu).