intro.md 1.20 KiB
ARBD Model Documentation
Welcome to the documentation for the ARBD Model package!
Overview
ARBD Model is a comprehensive package for coarse-grained molecular modeling and simulation of biomolecular systems. It provides tools for creating and simulating a variety of molecular models, including polymer systems, protein structures, and rigid bodies.
Features
- Polymer Modeling: Create and simulate various polymer models including flexible chain models, hydrophobicity-based models, and specialized DNA models.
- Rigid Body Simulation: Simulate molecular structures as rigid bodies with accurate hydrodynamic properties.
- Shape-Based Models: Generate coarse-grained models based on the shape of molecular structures.
- Interaction Potentials: Wide range of interaction potentials, including the ability to develop custom potentials using Iterative Boltzmann Inversion (IBI).
- Simulation Engines: Multiple simulation engine options for different modeling needs.
Getting Started
To get started, check out the Tutorials section for examples and walkthroughs.
Python API Reference
For detailed documentation of the Python API, see the API Reference section.