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Added the -add-resp option to uq_BP2bvp and uq_bvp2bvp allowing a user to...
Added the -add-resp option to uq_BP2bvp and uq_bvp2bvp allowing a user to specify whether they want the response functions added back to the problem data structure. Fixed a bug in uq_bvp_gen_samples that prevented the code from finding samples points when multiple stochastic parameters were specified. Modified uq_coll_add_response, uq_response_evaluation, uq_response_Jacobian, uq_coll_get_idx, and added uq_coll_add_response_adjoint, uq_pce_coefficients_adjoint, uq_int_response_adjoint_evaluation, uq_pce_coefficients_adjoint_dU, uq_int_response_adjoint_Jacobian, to properly handle integral response functions. Integral response functions require a uniform mesh and cannot handle coco's adaptive mesh functionality in this commit. Modified the way boundary value Jacobians and second derivatives are handled to make it easier for a user to provide them. Previously the user needed to specify Jacobians and second derivatives that properly accounted for the size of the sample. Now users can provide a sort of vectorized encoding of the Jacobian and second derivative and the wrapper function places the information in the correct spot for coco. Changes made in uq_pce_coefficients_dU and uq_pce_coefficients_dUdU to facilitate this. Some rearrangement of vector field files in coco_example_runs. Modifications to demo run files as needed to work with above changes. Some additional Mathematica calculations required for thesis document and a dead end multiple scales analysis of a duffing oscillator.
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- coco_example_runs/archive/duff/F.m 0 additions, 0 deletionscoco_example_runs/archive/duff/F.m
- coco_example_runs/archive/duff/F_dP.m 0 additions, 0 deletionscoco_example_runs/archive/duff/F_dP.m
- coco_example_runs/archive/duff/F_dU.m 0 additions, 0 deletionscoco_example_runs/archive/duff/F_dU.m
- coco_example_runs/archive/duff/adj_F.m 0 additions, 0 deletionscoco_example_runs/archive/duff/adj_F.m
- coco_example_runs/archive/duff/bc.m 0 additions, 0 deletionscoco_example_runs/archive/duff/bc.m
- coco_example_runs/archive/duff/bc_dU.m 0 additions, 0 deletionscoco_example_runs/archive/duff/bc_dU.m
- coco_example_runs/archive/duff/demo.m 1 addition, 1 deletioncoco_example_runs/archive/duff/demo.m
- coco_example_runs/archive/duff/obj_F.m 0 additions, 0 deletionscoco_example_runs/archive/duff/obj_F.m
- coco_example_runs/archive/duff/per_bc_update.m 0 additions, 0 deletionscoco_example_runs/archive/duff/per_bc_update.m
- coco_example_runs/archive/duff/steady_state_solution.m 0 additions, 0 deletionscoco_example_runs/archive/duff/steady_state_solution.m
- coco_example_runs/archive/duff_w_adjoint/duff/demo.m 0 additions, 0 deletionscoco_example_runs/archive/duff_w_adjoint/duff/demo.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het.m 0 additions, 0 deletionscoco_example_runs/archive/duff_w_adjoint/duff/duff_het.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DP.m 0 additions, 0 deletionscoco_example_runs/archive/duff_w_adjoint/duff/duff_het_DP.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DPDP.m 0 additions, 0 deletions..._example_runs/archive/duff_w_adjoint/duff/duff_het_DPDP.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DT.m 0 additions, 0 deletionscoco_example_runs/archive/duff_w_adjoint/duff/duff_het_DT.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DTDP.m 0 additions, 0 deletions..._example_runs/archive/duff_w_adjoint/duff/duff_het_DTDP.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DTDT.m 0 additions, 0 deletions..._example_runs/archive/duff_w_adjoint/duff/duff_het_DTDT.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DTDX.m 0 additions, 0 deletions..._example_runs/archive/duff_w_adjoint/duff/duff_het_DTDX.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DX.m 0 additions, 0 deletionscoco_example_runs/archive/duff_w_adjoint/duff/duff_het_DX.m
- coco_example_runs/archive/duff_w_adjoint/duff/duff_het_DXDP.m 0 additions, 0 deletions..._example_runs/archive/duff_w_adjoint/duff/duff_het_DXDP.m
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