Merge branch 'master' into 'thesis'

.gitignore

archive/demo.m

archive/demo_coll.m

archive/demo_po.m

archive/demo_po_a.m

archive/duff.m

archive/duff_DP.m

archive/duff_DU.m

archive/duffna.m

archive/duffna_DP.m

archive/duffna_DT.m

archive/duffna_DU.m

archive/lin_ode_adjoint_old_n_wrong.nb

archive/per_Jbc.m

archive/per_bc.m

archive/per_bc_update.m

...mple_runs/ch_2_linode_optimization_manual_adjoint/adj_F.m

...e_runs/ch_2_linode_optimization_manual_adjoint/adj_F_bc.m

...uns/ch_2_linode_optimization_manual_adjoint/adj_F_bc_dU.m

...e_runs/ch_2_linode_optimization_manual_adjoint/adj_F_dP.m