[SPARK-14089][CORE][MLLIB] Remove methods that has been deprecated since 1.1,...

[SPARK-14089][CORE][MLLIB] Remove methods that has been deprecated since 1.1, 1.2, 1.3, 1.4, and 1.5

## What changes were proposed in this pull request?

Removed methods that has been deprecated since 1.1, 1.2, 1.3, 1.4, and 1.5.

## How was this patch tested?

- manully checked that no codes in Spark call these methods any more
- existing test suits

Author: Liwei Lin <lwlin7@gmail.com>
Author: proflin <proflin.me@gmail.com>

Closes #11910 from lw-lin/remove-deprecates.