ARBD Model Documentation#
Welcome to the documentation for the ARBD Model package!
Overview#
ARBD Model is a comprehensive package for coarse-grained molecular modeling and simulation of biomolecular systems. It provides tools for creating and simulating a variety of molecular models, including polymer systems, protein structures, and rigid bodies.
Features#
Polymer Modeling: Create and simulate various polymer models including flexible chain models, hydrophobicity-based models, and specialized DNA models.
Rigid Body Simulation: Simulate molecular structures as rigid bodies with accurate hydrodynamic properties.
Shape-Based Models: Generate coarse-grained models based on the shape of molecular structures.
Interaction Potentials: Wide range of interaction potentials, including the ability to develop custom potentials using Iterative Boltzmann Inversion (IBI).
Simulation Engines: Multiple simulation engine options for different modeling needs.
Getting Started#
To get started, check out the Tutorials section for examples and walkthroughs.
Python API Reference#
For detailed documentation of the Python API, see the API Reference section.