ARBD Model Documentation

ARBD Model Documentation#

Welcome to the documentation for the ARBD Model package!

Overview#

ARBD Model is a comprehensive package for coarse-grained molecular modeling and simulation of biomolecular systems. It provides tools for creating and simulating a variety of molecular models, including polymer systems, protein structures, and rigid bodies.

Features#

  • Polymer Modeling: Create and simulate various polymer models including flexible chain models, hydrophobicity-based models, and specialized DNA models.

  • Rigid Body Simulation: Simulate molecular structures as rigid bodies with accurate hydrodynamic properties.

  • Shape-Based Models: Generate coarse-grained models based on the shape of molecular structures.

  • Interaction Potentials: Wide range of interaction potentials, including the ability to develop custom potentials using Iterative Boltzmann Inversion (IBI).

  • Simulation Engines: Multiple simulation engine options for different modeling needs.

Getting Started#

To get started, check out the Tutorials section for examples and walkthroughs.

Python API Reference#

For detailed documentation of the Python API, see the API Reference section.