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leahmcguire authored
Added optional model type parameter for  NaiveBayes training. Can be either Multinomial or Bernoulli.

When Bernoulli is given the Bernoulli smoothing is used for fitting and for prediction as per: http://nlp.stanford.edu/IR-book/html/htmledition/the-bernoulli-model-1.html.

 Default for model is original Multinomial fit and predict.

Added additional testing for Bernoulli and Multinomial models.

Author: leahmcguire <lmcguire@salesforce.com>
Author: Joseph K. Bradley <joseph@databricks.com>
Author: Leah McGuire <lmcguire@salesforce.com>

Closes #4087 from leahmcguire/master and squashes the following commits:

f3c8994 [leahmcguire] changed checks on model type to requires
acb69af [leahmcguire] removed enum type and replaces all modelType parameters with strings
2224b15 [Leah McGuire] Merge pull request #2 from jkbradley/leahmcguire-master
9ad89ca [Joseph K. Bradley] removed old code
6a8f383 [Joseph K. Bradley] Added new model save/load format 2.0 for NaiveBayesModel after modelType parameter was added.  Updated tests.  Also updated ModelType enum-like type.
852a727 [leahmcguire] merged with upstream master
a22d670 [leahmcguire] changed NaiveBayesModel modelType parameter back to NaiveBayes.ModelType, made NaiveBayes.ModelType serializable, fixed getter method in NavieBayes
18f3219 [leahmcguire] removed private from naive bayes constructor for lambda only
bea62af [leahmcguire] put back in constructor for NaiveBayes
01baad7 [leahmcguire] made fixes from code review
fb0a5c7 [leahmcguire] removed typo
e2d925e [leahmcguire] fixed nonserializable error that was causing naivebayes test failures
2d0c1ba [leahmcguire] fixed typo in NaiveBayes
c298e78 [leahmcguire] fixed scala style errors
b85b0c9 [leahmcguire] Merge remote-tracking branch 'upstream/master'
900b586 [leahmcguire] fixed model call so that uses type argument
ea09b28 [leahmcguire] Merge remote-tracking branch 'upstream/master'
e016569 [leahmcguire] updated test suite with model type fix
85f298f [leahmcguire] Merge remote-tracking branch 'upstream/master'
dc65374 [leahmcguire] integrated model type fix
7622b0c [leahmcguire] added comments and fixed style as per rb
b93aaf6 [Leah McGuire] Merge pull request #1 from jkbradley/nb-model-type
3730572 [Joseph K. Bradley] modified NB model type to be more Java-friendly
b61b5e2 [leahmcguire] added back compatable constructor to NaiveBayesModel to fix MIMA test failure
5a4a534 [leahmcguire] fixed scala style error in NaiveBayes
3891bf2 [leahmcguire] synced with apache spark and resolved merge conflict
d9477ed [leahmcguire] removed old inaccurate comment from test suite for mllib naive bayes
76e5b0f [leahmcguire] removed unnecessary sort from test
0313c0c [leahmcguire] fixed style error in NaiveBayes.scala
4a3676d [leahmcguire] Updated changes re-comments. Got rid of verbose populateMatrix method. Public api now has string instead of enumeration. Docs are updated."
ce73c63 [leahmcguire] added Bernoulli option to niave bayes model in mllib, added optional model type parameter for training. When Bernoulli is given the Bernoulli smoothing is used for fitting and for prediction http://nlp.stanford.edu/IR-book/html/htmledition/the-bernoulli-model-1.html
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Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, and Python, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and structured data processing, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page and project wiki. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.) More detailed documentation is available from the project site, at "Building Spark".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn-cluster" or "yarn-client" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run all automated tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions. See also "Third Party Hadoop Distributions" for guidance on building a Spark application that works with a particular distribution.

Configuration

Please refer to the Configuration guide in the online documentation for an overview on how to configure Spark.